Information for motif37


Reverse Opposite:

p-value:1e-8
log p-value:-2.008e+01
Information Content per bp:1.364
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif9.52%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif2.17%
Average Position of motif in Targets562.8 +/- 590.6bp
Average Position of motif in Background604.3 +/- 275.4bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0067.1_Pax2/Jaspar

Match Rank:1
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:VVHRKSMCDAGS
-NCGTGACN---

PB0108.1_Atf1_2/Jaspar

Match Rank:2
Score:0.54
Offset:1
Orientation:forward strand
Alignment:VVHRKSMCDAGS---
-GAATGACGAATAAC

Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:3
Score:0.51
Offset:3
Orientation:forward strand
Alignment:VVHRKSMCDAGS-
---GTCACGTGGT

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.49
Offset:3
Orientation:forward strand
Alignment:VVHRKSMCDAGS
---TTGCCAAG-

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:5
Score:0.48
Offset:2
Orientation:forward strand
Alignment:VVHRKSMCDAGS
--CATGAC----

MA0093.2_USF1/Jaspar

Match Rank:6
Score:0.47
Offset:2
Orientation:reverse strand
Alignment:VVHRKSMCDAGS-
--GGTCACGTGGC

PB0200.1_Zfp187_2/Jaspar

Match Rank:7
Score:0.46
Offset:0
Orientation:reverse strand
Alignment:VVHRKSMCDAGS----
NNAGGGACAAGGGCNC

NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.46
Offset:3
Orientation:reverse strand
Alignment:VVHRKSMCDAGS-
---GTCACGTGGM

ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:9
Score:0.46
Offset:3
Orientation:forward strand
Alignment:VVHRKSMCDAGS
---AGGCCTAG-

MA0146.2_Zfx/Jaspar

Match Rank:10
Score:0.46
Offset:2
Orientation:reverse strand
Alignment:VVHRKSMCDAGS----
--CAGGCCNNGGCCNN