Information for motif42


Reverse Opposite:

p-value:1e-6
log p-value:-1.424e+01
Information Content per bp:1.927
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif11.43%
Number of Background Sequences with motif6.3
Percentage of Background Sequences with motif3.76%
Average Position of motif in Targets476.7 +/- 406.6bp
Average Position of motif in Background334.3 +/- 425.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0033.1_FOXL1/Jaspar

Match Rank:1
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:TATATCTT
TATGTNTA

PB0126.1_Gata5_2/Jaspar

Match Rank:2
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----TATATCTT----
NNNCTGATATCTCNNNN

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TATATCTT-
AAGATATCCTT

PB0163.1_Six6_2/Jaspar

Match Rank:4
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------TATATCTT---
ATGGGATATATCCGCCT

PB0080.1_Tbp_1/Jaspar

Match Rank:5
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------TATATCTT--
NANTTATATATAANGN

PB0198.1_Zfp128_2/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TATATCTT----
TGTATATATATACC

MA0497.1_MEF2C/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TATATCTT------
TTCTATTTTTAGNNN

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TATATCTT----
KCTATTTTTRGH

MA0037.2_GATA3/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TATATCTT
TCTTATCT-

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TATATCTT
YSTTATCT-