Information for motif43


Reverse Opposite:

p-value:1e-5
log p-value:-1.252e+01
Information Content per bp:1.530
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif8.57%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif2.42%
Average Position of motif in Targets466.8 +/- 583.5bp
Average Position of motif in Background590.2 +/- 326.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0063.1_Hoxb8/Jaspar

Match Rank:1
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--TATTAATTCC----
TTTATTAATTGCNNGN

PH0129.1_Otx1/Jaspar

Match Rank:2
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---TATTAATTCC----
NNNAATTAATCCCCNCN

MF0010.1_Homeobox_class/Jaspar

Match Rank:3
Score:0.73
Offset:1
Orientation:forward strand
Alignment:TATTAATTCC
-AATAATT--

PH0130.1_Otx2/Jaspar

Match Rank:4
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---TATTAATTCC----
GANNATTAATCCCTNNN

PH0138.1_Pitx2/Jaspar

Match Rank:5
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---TATTAATTCC----
GNNNATTAATCCCTNCN

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:6
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---TATTAATTCC----
GAAAATTAATTACTTCG

PH0172.1_Tlx2/Jaspar

Match Rank:7
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----TATTAATTCC---
AANTTATTAATTAATTA

PH0120.1_Nkx6-3/Jaspar

Match Rank:8
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TATTAATTCC----
GAAAATTAATTACTTTG

PH0119.1_Nkx6-1_2/Jaspar

Match Rank:9
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TATTAATTCC---
AGTAATTAATTACTTC

MA0075.1_Prrx2/Jaspar

Match Rank:10
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:TATTAATTCC
---TAATT--