Information for motif12


Reverse Opposite:

p-value:1e-19
log p-value:-4.467e+01
Information Content per bp:1.615
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif6.40%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets436.9 +/- 374.8bp
Average Position of motif in Background806.8 +/- 490.1bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0133.1_BRCA1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CAACCCTATGAA
ACAACAC------

PH0026.1_Duxbl/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CAACCCTATGAA-----
CGACCCAATCAACGGTG

CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:3
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------CAACCCTATGAA--
NTNATGCAAYMNNHTGMAAY

MA0074.1_RXRA::VDR/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CAACCCTATGAA--
TGAACCCGATGACCC

PH0057.1_Hoxb13/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CAACCCTATGAA-----
-AACCCAATAAAATTCG

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:6
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CAACCCTATGAA--
----CCTTTGAWGT

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CAACCCTATGAA--
----CCTTTGATGT

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CAACCCTATGAA-
---NGCAATTAAA

VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:9
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----CAACCCTATGAA----
NNNTGAACTCNNTGACCTCN

PB0128.1_Gcm1_2/Jaspar

Match Rank:10
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CAACCCTATGAA--
NTCNTCCCCTATNNGNN