Information for motif2


Reverse Opposite:

p-value:1e-29
log p-value:-6.776e+01
Information Content per bp:1.749
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif10.67%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.85%
Average Position of motif in Targets368.9 +/- 343.7bp
Average Position of motif in Background430.1 +/- 191.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0111.1_Spz1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CAGGGYAAVA--
-AGGGTAACAGC

MA0524.1_TFAP2C/Jaspar

Match Rank:2
Score:0.63
Offset:-8
Orientation:forward strand
Alignment:--------CAGGGYAAVA
CATGGCCCCAGGGCA---

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CAGGGYAAVA
CACAGN------

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CAGGGYAAVA
TTGCCATGGCAACC

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CAGGGYAAVA
BTCAAGGTCA--

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CAGGGYAAVA
TTGCCATGGCAACN

MA0592.1_ESRRA/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CAGGGYAAVA
CCAAGGTCACA

MA0600.1_RFX2/Jaspar

Match Rank:8
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CAGGGYAAVA----
GTTGCCATGGCAACCGCGG

MA0103.2_ZEB1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CAGGGYAAVA
CAGGTGAGG-

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CAGGGYAAVA
NTCAAGGTCA--