Information for motif20


Reverse Opposite:

p-value:1e-13
log p-value:-3.210e+01
Information Content per bp:1.861
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif11.28%
Number of Background Sequences with motif7.3
Percentage of Background Sequences with motif2.50%
Average Position of motif in Targets312.6 +/- 325.4bp
Average Position of motif in Background680.1 +/- 131.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0461.1_Atoh1/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TAGAGGGC
CAGATGGC

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TAGAGGGC-------
GCCASCAGGGGGCGCYVNNG

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:3
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TAGAGGGC
AACAGATGGC

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:4
Score:0.64
Offset:-7
Orientation:reverse strand
Alignment:-------TAGAGGGC-----
TGGCCACCAGGTGGCACTNT

MA0512.1_Rxra/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TAGAGGGC---
CAAAGGTCAGA

MA0139.1_CTCF/Jaspar

Match Rank:6
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------TAGAGGGC----
TGGCCACCAGGGGGCGCTA

PB0076.1_Sp4_1/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TAGAGGGC------
NNNAAGGGGGCGGGNNN

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TAGAGGGC--
CAAAGGTCAG

MA0597.1_THAP1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TAGAGGGC--
-TNNGGGCAG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TAGAGGGC-
CCAGACRSVB