Information for motif27


Reverse Opposite:

p-value:1e-12
log p-value:-2.881e+01
Information Content per bp:1.683
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif6.10%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.87%
Average Position of motif in Targets339.4 +/- 241.3bp
Average Position of motif in Background567.3 +/- 291.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0016.1_Cux1_1/Jaspar

Match Rank:1
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----GTGATCACAD--
ACCGGTTGATCACCTGA

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GTGATCACAD
NDGTAAACARRN

PH0072.1_Hoxc8/Jaspar

Match Rank:3
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----GTGATCACAD-
TTGGGGTAATTAACGT

PH0061.1_Hoxb6/Jaspar

Match Rank:4
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----GTGATCACAD-
TATTGGTAATTACCTT

MA0031.1_FOXD1/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GTGATCACAD
GTAAACAT--

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GTGATCACAD
YTAATTAVHT

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GTGATCACAD
GTAAACAG--

PH0017.1_Cux1_2/Jaspar

Match Rank:8
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----GTGATCACAD
TAATGATGATCACTA

MA0593.1_FOXP2/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GTGATCACAD
AAGTAAACAAA-

PH0071.1_Hoxc6/Jaspar

Match Rank:10
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GTGATCACAD---
CAAATTAATTAATAAAA