Information for motif28


Reverse Opposite:

p-value:1e-12
log p-value:-2.881e+01
Information Content per bp:1.800
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif6.10%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.89%
Average Position of motif in Targets224.9 +/- 166.7bp
Average Position of motif in Background337.9 +/- 325.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

T1ISRE(IRF)/Ifnb-Exp/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:RATTCCCTTTCT
ACTTTCGTTTCT

MA0514.1_Sox3/Jaspar

Match Rank:2
Score:0.66
Offset:5
Orientation:forward strand
Alignment:RATTCCCTTTCT---
-----CCTTTGTTTT

MA0143.3_Sox2/Jaspar

Match Rank:3
Score:0.66
Offset:5
Orientation:forward strand
Alignment:RATTCCCTTTCT-
-----CCTTTGTT

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.64
Offset:5
Orientation:forward strand
Alignment:RATTCCCTTTCT-
-----CCWTTGTY

ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-RATTCCCTTTCT
AGTTTCAGTTTC-

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-RATTCCCTTTCT
ACTTTCACTTTC-

PB0033.1_Irf3_1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-RATTCCCTTTCT-
CAGTTTCGNTTCTN

PB0132.1_Hbp1_2/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:RATTCCCTTTCT-----
TGTTCCCATTGTGTACT

PB0166.1_Sox12_2/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:RATTCCCTTTCT------
--ANTCCTTTGTCTNNNN

MA0442.1_SOX10/Jaspar

Match Rank:10
Score:0.60
Offset:6
Orientation:forward strand
Alignment:RATTCCCTTTCT
------CTTTGT