Information for motif30


Reverse Opposite:

p-value:1e-11
log p-value:-2.729e+01
Information Content per bp:1.530
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif7.93%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif1.64%
Average Position of motif in Targets437.8 +/- 467.3bp
Average Position of motif in Background746.8 +/- 455.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0484.1_HNF4G/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AAGGCCAAAG----
AGAGTCCAAAGTCCA

HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AAGGCCAAAG----
CANAGNNCAAAGTCCA

MA0114.2_HNF4A/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:AAGGCCAAAG-----
NAGNNCAAAGTCCAN

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:4
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AAGGCCAAAG
NTCAAGGTCA---

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AAGGCCAAAG
BTCAAGGTCA---

MA0160.1_NR4A2/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AAGGCCAAAG
AAGGTCAC--

MA0115.1_NR1H2::RXRA/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AAGGCCAAAG------
AAAGGTCAAAGGTCAAC

RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AAGGCCAAAG----
TAGGGCAAAGGTCA

MA0141.2_Esrrb/Jaspar

Match Rank:9
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----AAGGCCAAAG
AGCTCAAGGTCA---

MA0161.1_NFIC/Jaspar

Match Rank:10
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AAGGCCAAAG
--TGCCAA--