Information for motif35


Reverse Opposite:

p-value:1e-10
log p-value:-2.338e+01
Information Content per bp:1.530
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif10.98%
Number of Background Sequences with motif9.4
Percentage of Background Sequences with motif3.20%
Average Position of motif in Targets332.7 +/- 315.4bp
Average Position of motif in Background602.4 +/- 449.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0080.1_Hoxd8/Jaspar

Match Rank:1
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----CATTAATATATT-
NAGCCATTAATTANTTA

PH0150.1_Pou4f3/Jaspar

Match Rank:2
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----CATTAATATATT
GACNTCATTAATAANN-

PH0172.1_Tlx2/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CATTAATATATT-
AANTTATTAATTAATTA

PB0080.1_Tbp_1/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CATTAATATATT----
NANTTATATATAANGN

PH0018.1_Dbx1/Jaspar

Match Rank:5
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----CATTAATATATT-
TNATTATTAATTAATTA

PH0019.1_Dbx2/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CATTAATATATT-
TTTAATTAATTAATTC

PB0135.1_Hoxa3_2/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CATTAATATATT--
CCTTAATNGNTTTT

PH0056.1_Hoxa9/Jaspar

Match Rank:8
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CATTAATATATT
ACGGCCATAAAATTAAT

PH0038.1_Hlx/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CATTAATATATT---
CCATAATTAATTACA

PB0170.1_Sox17_2/Jaspar

Match Rank:10
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CATTAATATATT
GACCACATTCATACAAT