Information for motif37


Reverse Opposite:

p-value:1e-8
log p-value:-1.856e+01
Information Content per bp:1.530
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif6.40%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif1.37%
Average Position of motif in Targets354.9 +/- 298.2bp
Average Position of motif in Background699.3 +/- 264.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CCTTGCCTATAT
NNACTTGCCTT---

MA0033.1_FOXL1/Jaspar

Match Rank:2
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:CCTTGCCTATAT---
-------TATGTNTA

PB0163.1_Six6_2/Jaspar

Match Rank:3
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CCTTGCCTATAT------
-ATGGGATATATCCGCCT

Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CCTTGCCTATAT
ATTTGCATAT--

PB0014.1_Esrra_1/Jaspar

Match Rank:5
Score:0.53
Offset:-8
Orientation:reverse strand
Alignment:--------CCTTGCCTATAT
NNNNATGACCTTGANTN---

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CCTTGCCTATAT
TGACCTTGAV-----

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:7
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CCTTGCCTATAT
TGACCTTGAN-----

POL012.1_TATA-Box/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CCTTGCCTATAT--
NNNNNNCTTTTATAN

MA0108.2_TBP/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CCTTGCCTATAT--
NNNNNNCTTTTATAN

MA0597.1_THAP1/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:forward strand
Alignment:CCTTGCCTATAT
--CTGCCCGCA-