Information for motif39


Reverse Opposite:

p-value:1e-7
log p-value:-1.695e+01
Information Content per bp:1.612
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif6.10%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif1.47%
Average Position of motif in Targets309.1 +/- 301.7bp
Average Position of motif in Background763.5 +/- 512.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0009.1_T/Jaspar

Match Rank:1
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:CCTTCACAGCTA-
--TTCACACCTAG

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:CCTTCACAGCTA
----CACAGN--

PH0158.1_Rhox11_2/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CCTTCACAGCTA---
TCNCTTTACAGCGNNNT

PH0170.1_Tgif2/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CCTTCACAGCTA---
GTATTGACAGCTNNTT

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CCTTCACAGCTA
-ATTAACACCT-

PH0157.1_Rhox11_1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CCTTCACAGCTA---
TCNNTTTACAGCGNNNT

PH0102.1_Meis1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCTTCACAGCTA---
NTATTGACAGCTNNTT

PH0169.1_Tgif1/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCTTCACAGCTA---
GATATTGACAGCTGCGT

PH0104.1_Meis2/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCTTCACAGCTA---
NTATTGACAGGTNNTN

PH0105.1_Meis3/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCTTCACAGCTA---
GTATTGACAGGTNNTT