Information for motif40


Reverse Opposite:

p-value:1e-6
log p-value:-1.540e+01
Information Content per bp:1.860
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif5.79%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif1.45%
Average Position of motif in Targets305.9 +/- 277.5bp
Average Position of motif in Background624.3 +/- 267.7bp
Strand Bias (log2 ratio + to - strand density)-1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0596.1_SREBF2/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ATCASGAC--
ATCACCCCAT

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ATCASGAC-
-GCACGTNC

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:ATCASGAC--
ANCAGGATGT

HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:ATCASGAC---
-GCACGTACCC

MA0067.1_Pax2/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-ATCASGAC
AGTCACGC-

Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:ATCASGAC--
ATCACCCCAT

MA0595.1_SREBF1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:ATCASGAC--
ATCACCCCAC

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:ATCASGAC--
NACAGGAAAT

Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--ATCASGAC--
CNGTCACGCCAC

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:ATCASGAC
BGCACGTA