Information for motif41


Reverse Opposite:

p-value:1e-3
log p-value:-8.485e+00
Information Content per bp:1.530
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif4.88%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif1.74%
Average Position of motif in Targets477.9 +/- 398.8bp
Average Position of motif in Background594.0 +/- 334.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0056.1_MZF1_1-4/Jaspar

Match Rank:1
Score:0.82
Offset:0
Orientation:forward strand
Alignment:TGGGGACA
TGGGGA--

PB0057.1_Rxra_1/Jaspar

Match Rank:2
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----TGGGGACA-----
NTNNNGGGGTCANGNNN

PB0133.1_Hic1_2/Jaspar

Match Rank:3
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----TGGGGACA---
NNNNTTGGGCACNNCN

PB0118.1_Esrra_2/Jaspar

Match Rank:4
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----TGGGGACA-----
GGCGAGGGGTCAAGGGC

PB0030.1_Hnf4a_1/Jaspar

Match Rank:5
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----TGGGGACA-----
CTCCAGGGGTCAATTGA

PB0157.1_Rara_2/Jaspar

Match Rank:6
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----TGGGGACA----
AGAGCGGGGTCAAGTA

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TGGGGACA--
GGTGYTGACAGS

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TGGGGACA-
CCAGGAACAG

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TGGGGACA
CSTGGGAAAD

PB0153.1_Nr2f2_2/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TGGGGACA----
CGCGCCGGGTCACGTA