Information for motif6


Reverse Opposite:

p-value:1e-26
log p-value:-6.034e+01
Information Content per bp:1.683
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif7.93%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets347.9 +/- 321.5bp
Average Position of motif in Background633.9 +/- 42.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0059.1_Six6_1/Jaspar

Match Rank:1
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TGATGCTCTT--
ANANNTGATACCCNATN

PH0166.1_Six6_2/Jaspar

Match Rank:2
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TGATGCTCTT--
AATNTTGATACCCTATN

PH0163.1_Six3/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TGATGCTCTT--
ANANGTGATACCCTATN

PH0161.1_Six1/Jaspar

Match Rank:4
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TGATGCTCTT--
ANNNATGATACCCCATC

PH0165.1_Six6_1/Jaspar

Match Rank:5
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TGATGCTCTT--
ANANNTGATACCCTATN

PH0162.1_Six2/Jaspar

Match Rank:6
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----TGATGCTCTT--
ANANGTGATACCCCATT

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGATGCTCTT-----
AGATGCTRCTRCCHT

MA0111.1_Spz1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGATGCTCTT
GCTGTTACCCT-

MA0467.1_Crx/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TGATGCTCTT
CTAATCCTCTT

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGATGCTCTT
MTGATGCAAT-