Information for motif1


Reverse Opposite:

p-value:1e-32
log p-value:-7.544e+01
Information Content per bp:1.620
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif17.37%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif1.29%
Average Position of motif in Targets518.1 +/- 454.7bp
Average Position of motif in Background174.4 +/- 161.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0022.1_Gata5_1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-ATACTCATAAGT----
TAAACTGATAAGAAGAT

PH0068.1_Hoxc13/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ATACTCATAAGT---
AAAGCTCGTAAAATTT

PB0198.1_Zfp128_2/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---ATACTCATAAGT
TGTATATATATACC-

PH0048.1_Hoxa13/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-ATACTCATAAGT---
AAACCTCGTAAAATTT

PB0176.1_Sox5_2/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:ATACTCATAAGT-----
--TATCATAATTAAGGA

PH0031.1_Evx1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-ATACTCATAAGT----
AGAACTAATTAGTGGAC

MA0124.1_NKX3-1/Jaspar

Match Rank:7
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:ATACTCATAAGT--
-------TAAGTAT

MA0063.1_Nkx2-5/Jaspar

Match Rank:8
Score:0.57
Offset:6
Orientation:forward strand
Alignment:ATACTCATAAGT-
------TTAATTG

PH0148.1_Pou3f3/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---ATACTCATAAGT--
AAAATATGCATAATAAA

PH0092.1_Lhx2/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-ATACTCATAAGT----
TAAACTAATTAGTGAAC