Information for motif19


Reverse Opposite:

p-value:1e-14
log p-value:-3.293e+01
Information Content per bp:1.766
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif11.27%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif1.61%
Average Position of motif in Targets405.5 +/- 392.3bp
Average Position of motif in Background430.6 +/- 564.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0442.1_SOX10/Jaspar

Match Rank:1
Score:0.62
Offset:6
Orientation:forward strand
Alignment:TAAACACTATGT
------CTTTGT

MA0007.2_AR/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TAAACACTATGT----
-GNACANNNTGTTCTT

GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TAAACACTATGT----
-GRACAGWMTGTYCTB

MA0033.1_FOXL1/Jaspar

Match Rank:4
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:TAAACACTATGT---
-------TATGTNTA

MA0113.2_NR3C1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TAAACACTATGT---
AGAACAGAATGTTCT

MA0143.3_Sox2/Jaspar

Match Rank:6
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TAAACACTATGT-
-----CCTTTGTT

MA0514.1_Sox3/Jaspar

Match Rank:7
Score:0.55
Offset:5
Orientation:forward strand
Alignment:TAAACACTATGT---
-----CCTTTGTTTT

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TAAACACTATGT----
-GVACAGNMTGTYCTB

MA0078.1_Sox17/Jaspar

Match Rank:9
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:TAAACACTATGT-
----GACAATGNN

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TAAACACTATGT---
NAGAACAGNCTGTNCT