Information for motif25


Reverse Opposite:

p-value:1e-13
log p-value:-3.071e+01
Information Content per bp:1.530
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif10.80%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif1.45%
Average Position of motif in Targets638.9 +/- 694.7bp
Average Position of motif in Background460.4 +/- 178.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0057.1_Hoxb13/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AACTAATAAGAT---
AACCCAATAAAATTCG

PH0092.1_Lhx2/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AACTAATAAGAT---
TAAACTAATTAGTGAAC

PH0154.1_Prrx1/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AACTAATAAGAT---
GTAACTAATTAACTACT

PB0022.1_Gata5_1/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AACTAATAAGAT---
TAAACTGATAAGAAGAT

PH0058.1_Hoxb3/Jaspar

Match Rank:5
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---AACTAATAAGAT--
TNNNACTAATTAGNTCA

PH0094.1_Lhx4/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AACTAATAAGAT---
TAAACTAATTAGCTTTG

PH0028.1_En1/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AACTAATAAGAT-
GCGAACTAATTAATGC

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AACTAATAAGAT---
CTACCAATAAAATTCT

PH0001.1_Alx3/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AACTAATAAGAT---
TAAACTAATTAGCTGAG

PH0031.1_Evx1/Jaspar

Match Rank:10
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---AACTAATAAGAT--
NNNCACTAATTAGTNNT