Information for motif3


Reverse Opposite:

p-value:1e-20
log p-value:-4.679e+01
Information Content per bp:1.730
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif8.92%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.52%
Average Position of motif in Targets214.4 +/- 187.9bp
Average Position of motif in Background269.4 +/- 234.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0133.1_BRCA1/Jaspar

Match Rank:1
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:ATYCAGTGTKGT
-----GTGTTGN

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:2
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:ATYCAGTGTKGT---
---NNHTGTGGTTWN

POL007.1_BREd/Jaspar

Match Rank:3
Score:0.57
Offset:5
Orientation:forward strand
Alignment:ATYCAGTGTKGT
-----GTTTGTT

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.56
Offset:3
Orientation:forward strand
Alignment:ATYCAGTGTKGT
---CTGTCTGG-

PB0122.1_Foxk1_2/Jaspar

Match Rank:5
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:ATYCAGTGTKGT------
---NNNTGTTGTTGTTNG

PB0091.1_Zbtb3_1/Jaspar

Match Rank:6
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----ATYCAGTGTKGT-
NNNANTGCAGTGCNNTT

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:7
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:ATYCAGTGTKGT---
-----CTGTGGTTTN

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--ATYCAGTGTKGT---
NNNTCCTTTGTTCTNNN

GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:ATYCAGTGTKGT--
--CGTGGGTGGTCC

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-ATYCAGTGTKGT----
NNTNNTGTCTGGNNTNG