Information for motif34


Reverse Opposite:

p-value:1e-10
log p-value:-2.437e+01
Information Content per bp:1.630
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif9.39%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif1.70%
Average Position of motif in Targets258.1 +/- 310.7bp
Average Position of motif in Background515.3 +/- 312.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0079.1_Sry_1/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CATTAGGATTAA-
NANTATTATAATTNNN

PB0069.1_Sox21_1/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CATTAGGATTAA-
TTTAATTATAATTAAG

PB0064.1_Sox14_1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CATTAGGATTAA-
NNTAATTATAATTNNN

PH0025.1_Dmbx1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CATTAGGATTAA----
TGAACCGGATTAATGAA

PH0126.1_Obox6/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CATTAGGATTAA--
AAAAACGGATTATTG

MA0132.1_Pdx1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CATTAGGATTAA
AATTAG------

PH0138.1_Pitx2/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CATTAGGATTAA-----
TGAAGGGATTAATCATC

PH0130.1_Otx2/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CATTAGGATTAA-----
TGTAGGGATTAATTGTC

PH0137.1_Pitx1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CATTAGGATTAA----
TTAGAGGGATTAACAAT

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CATTAGGATTAA-
-----GGATTAGC