Information for motif39


Reverse Opposite:

p-value:1e-8
log p-value:-2.063e+01
Information Content per bp:1.530
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif7.51%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif1.04%
Average Position of motif in Targets374.3 +/- 340.2bp
Average Position of motif in Background392.2 +/- 368.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0151.1_Pou6f1_1/Jaspar

Match Rank:1
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GTAATGAGTTCC-
GACGATAATGAGCTTGC

PH0152.1_Pou6f1_2/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GTAATGAGTTCC-
AAACATAATGAGGTTGC

PH0028.1_En1/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GTAATGAGTTCC-
GNATTAATTAGTTNNC

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GTAATGAGTTCC
GKTAATGR-----

PH0081.1_Pdx1/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GTAATGAGTTCC-
AAGGTAATTAGCTCAT

PH0045.1_Hoxa1/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GTAATGAGTTCC-
ACGGTAATTAGCTCAG

PH0058.1_Hoxb3/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GTAATGAGTTCC
TNNNACTAATTAGNTCA

PH0039.1_Mnx1/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GTAATGAGTTCC-
GTACTAATTAGTGGCG

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GTAATGAGTTCC
-TAATTAGN---

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GTAATGAGTTCC
YTAATTAVHT--