Information for motif40


Reverse Opposite:

p-value:1e-8
log p-value:-1.929e+01
Information Content per bp:1.953
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif6.10%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.81%
Average Position of motif in Targets253.3 +/- 247.6bp
Average Position of motif in Background268.5 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-CTGTGCAA
GCTGTG---

MA0102.3_CEBPA/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CTGTGCAA-
NATTGTGCAAT

PB0044.1_Mtf1_1/Jaspar

Match Rank:3
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CTGTGCAA---
GGGCCGTGTGCAAAAA

MA0466.1_CEBPB/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CTGTGCAA--
ATTGTGCAATA

MA0019.1_Ddit3::Cebpa/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTGTGCAA----
AGATGCAATCCC

CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTGTGCAA-
ATTGCGCAAC

PB0026.1_Gm397_1/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CTGTGCAA-----
NNGTATGTGCACATNNN

PB0104.1_Zscan4_1/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CTGTGCAA------
TACATGTGCACATAAAA

Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CTGTGCAA-----
NNNVCTGWGYAAACASN

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.62
Offset:-7
Orientation:reverse strand
Alignment:-------CTGTGCAA
NNTCCTGCTGTGNNN