Information for motif41


Reverse Opposite:

p-value:1e-8
log p-value:-1.850e+01
Information Content per bp:1.530
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif7.98%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif1.52%
Average Position of motif in Targets653.0 +/- 492.3bp
Average Position of motif in Background1013.3 +/- 488.1bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0164.1_Nr2e3/Jaspar

Match Rank:1
Score:0.70
Offset:6
Orientation:reverse strand
Alignment:GACACTAAGCTT-
------AAGCTTG

MA0122.1_Nkx3-2/Jaspar

Match Rank:2
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GACACTAAGCTT
NCCACTTAN---

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:3
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GACACTAAGCTT
AGGTCTCTAACC--

MA0467.1_Crx/Jaspar

Match Rank:4
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GACACTAAGCTT---
----CTAATCCTCTT

MA0078.1_Sox17/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GACACTAAGCTT
GACAATGNN---

PB0037.1_Isgf3g_1/Jaspar

Match Rank:6
Score:0.51
Offset:-7
Orientation:forward strand
Alignment:-------GACACTAAGCTT
CAAAATCGAAACTAA----

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:7
Score:0.51
Offset:3
Orientation:forward strand
Alignment:GACACTAAGCTT
---GCTAATCC-

PB0036.1_Irf6_1/Jaspar

Match Rank:8
Score:0.50
Offset:-6
Orientation:forward strand
Alignment:------GACACTAAGCTT
CTGATCGAAACCAAAGT-

MA0514.1_Sox3/Jaspar

Match Rank:9
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:GACACTAAGCTT
AAAACAAAGG--

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:GACACTAAGCTT
-NNACTTACCTN