Information for motif42


Reverse Opposite:

p-value:1e-7
log p-value:-1.743e+01
Information Content per bp:1.614
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif19.25%
Number of Background Sequences with motif22.8
Percentage of Background Sequences with motif7.80%
Average Position of motif in Targets521.7 +/- 507.8bp
Average Position of motif in Background573.7 +/- 431.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--TKAGWAWK
CSTGGGAAAD

MA0124.1_NKX3-1/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TKAGWAWK
TAAGTAT-

MA0519.1_Stat5a::Stat5b/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TKAGWAWK
TTCTTGGAAAN

MA0032.1_FOXC1/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TKAGWAWK
GGTAAGTA--

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TKAGWAWK
TTTCTNAGAAAN

PB0115.1_Ehf_2/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TKAGWAWK----
AAGATCGGAANTNNNA

PB0194.1_Zbtb12_2/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TKAGWAWK--
TATCATTAGAACGCT

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TKAGWAWK-
NCTGGAATGC

MA0144.2_STAT3/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----TKAGWAWK
CTTCTGGGAAA-

PB0187.1_Tcf7_2/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----TKAGWAWK--
CCGTATTATAAACAA