Information for motif6


Reverse Opposite:

p-value:1e-18
log p-value:-4.345e+01
Information Content per bp:1.748
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif8.45%
Number of Background Sequences with motif0.3
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets636.4 +/- 668.0bp
Average Position of motif in Background147.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0072.1_Sox5_1/Jaspar

Match Rank:1
Score:0.83
Offset:-5
Orientation:reverse strand
Alignment:-----ATTGTTCTRT-
NNTTTATTGTTCTNNN

PB0062.1_Sox12_1/Jaspar

Match Rank:2
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--ATTGTTCTRT--
TAATTGTTCTAAAC

PB0063.1_Sox13_1/Jaspar

Match Rank:3
Score:0.81
Offset:-5
Orientation:reverse strand
Alignment:-----ATTGTTCTRT-
AANTTATTGTTCTNNA

PB0074.1_Sox8_1/Jaspar

Match Rank:4
Score:0.79
Offset:-6
Orientation:forward strand
Alignment:------ATTGTTCTRT-
GTATCTATTGTTCTTTA

PB0070.1_Sox30_1/Jaspar

Match Rank:5
Score:0.79
Offset:-6
Orientation:reverse strand
Alignment:------ATTGTTCTRT
ANNTCCATTGTTCNNN

PB0067.1_Sox18_1/Jaspar

Match Rank:6
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----ATTGTTCTRT--
TTCAATTGTTCTAAAA

PB0073.1_Sox7_1/Jaspar

Match Rank:7
Score:0.78
Offset:-9
Orientation:reverse strand
Alignment:---------ATTGTTCTRT---
TNNANNTCTATTGTTNTNNANN

PB0173.1_Sox21_2/Jaspar

Match Rank:8
Score:0.78
Offset:-5
Orientation:forward strand
Alignment:-----ATTGTTCTRT--
AATCAATTGTTCCGCTA

PB0065.1_Sox15_1/Jaspar

Match Rank:9
Score:0.77
Offset:-6
Orientation:reverse strand
Alignment:------ATTGTTCTRT-
ANNTCTATTGTTCNNNA

PB0183.1_Sry_2/Jaspar

Match Rank:10
Score:0.77
Offset:-5
Orientation:reverse strand
Alignment:-----ATTGTTCTRT--
CNNNTATTGTTCNNNNN