Information for motif9


Reverse Opposite:

p-value:1e-18
log p-value:-4.175e+01
Information Content per bp:1.728
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif11.74%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif1.27%
Average Position of motif in Targets333.5 +/- 310.9bp
Average Position of motif in Background366.5 +/- 145.8bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:1
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:CCTGTCACCA--
SCTGTCARCACC

PH0141.1_Pknox2/Jaspar

Match Rank:2
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CCTGTCACCA-
AAGCACCTGTCAATAT

MA0498.1_Meis1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CCTGTCACCA----
AGCTGTCACTCACCT

PH0105.1_Meis3/Jaspar

Match Rank:4
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CCTGTCACCA-
AATTACCTGTCAATAC

PH0104.1_Meis2/Jaspar

Match Rank:5
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CCTGTCACCA-
AAAGACCTGTCAATAC

PH0102.1_Meis1/Jaspar

Match Rank:6
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CCTGTCACCA-
AACGAGCTGTCAATAC

PH0140.1_Pknox1/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CCTGTCACCA-
AAAGACCTGTCAATCC

PH0169.1_Tgif1/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CCTGTCACCA--
NNNCAGCTGTCAATATN

MA0510.1_RFX5/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCTGTCACCA-----
NCTGTTGCCAGGGAG

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CCTGTCACCA---
-CTGTTGCTAGGS