Information for motif11


Reverse Opposite:

p-value:1e-28
log p-value:-6.529e+01
Information Content per bp:1.638
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif10.16%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.95%
Average Position of motif in Targets295.7 +/- 237.1bp
Average Position of motif in Background1171.0 +/- 781.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0152.1_NFATC2/Jaspar

Match Rank:1
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:CATGGAAAMAAK
--TGGAAAA---

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:2
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CATGGAAAMAAK
AATGGAAAAT--

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CATGGAAAMAAK
CSTGGGAAAD--

PB0012.1_Elf3_1/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CATGGAAAMAAK
AACAAGGAAGTAA-

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CATGGAAAMAAK
TTGCCATGGCAACC--

MA0600.1_RFX2/Jaspar

Match Rank:6
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CATGGAAAMAAK--
GTTGCCATGGCAACCGCGG

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CATGGAAAMAAK
TTGCCATGGCAACN--

NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CATGGAAAMAAK-------
NANTGGAAAAANTGAGTCAN

MA0510.1_RFX5/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CATGGAAAMAAK
CTCCCTGGCAACAGC

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CATGGAAAMAAK
SCCTAGCAACAG-