Information for motif12


Reverse Opposite:

p-value:1e-27
log p-value:-6.248e+01
Information Content per bp:1.780
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif12.46%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif1.61%
Average Position of motif in Targets345.6 +/- 396.1bp
Average Position of motif in Background546.2 +/- 496.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:AGCACAGCCW
--CACAGN--

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AGCACAGCCW-
GGCCACACCCAN

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.68
Offset:4
Orientation:forward strand
Alignment:AGCACAGCCW
----CAGCC-

MA0493.1_Klf1/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGCACAGCCW
GGCCACACCCA

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AGCACAGCCW
CCAGGAACAG---

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:AGCACAGCCW-
---BCAGACWA

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGCACAGCCW
GCCACACCCA

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:8
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGCACAGCCW
AAACCACAGC--

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGCACAGCCW----
GAGCACAGCAGGACA

PB0130.1_Gm397_2/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AGCACAGCCW---
AGCGGCACACACGCAA