Information for motif2


Reverse Opposite:

p-value:1e-52
log p-value:-1.214e+02
Information Content per bp:1.419
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif15.74%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.99%
Average Position of motif in Targets540.0 +/- 491.8bp
Average Position of motif in Background95.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.42
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-BCGCGCCH
AGCGCGCC-

PB0009.1_E2F3_1/Jaspar

Match Rank:2
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---BCGCGCCH----
ANCGCGCGCCCTTNN

PB0008.1_E2F2_1/Jaspar

Match Rank:3
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---BCGCGCCH----
NTCGCGCGCCTTNNN

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----BCGCGCCH-----
TACGCCCCGCCACTCTG

PB0180.1_Sp4_2/Jaspar

Match Rank:5
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----BCGCGCCH---
NNGGCCACGCCTTTN

PB0039.1_Klf7_1/Jaspar

Match Rank:6
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----BCGCGCCH----
TCGACCCCGCCCCTAT

MA0516.1_SP2/Jaspar

Match Rank:7
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-BCGCGCCH------
GCCCCGCCCCCTCCC

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:8
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-BCGCGCCH-
GCCMCRCCCH

POL003.1_GC-box/Jaspar

Match Rank:9
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---BCGCGCCH---
NAGCCCCGCCCCCN

MA0079.3_SP1/Jaspar

Match Rank:10
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-BCGCGCCH--
GCCCCGCCCCC