Information for motif27


Reverse Opposite:

p-value:1e-16
log p-value:-3.809e+01
Information Content per bp:1.530
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif10.82%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif1.96%
Average Position of motif in Targets431.6 +/- 376.2bp
Average Position of motif in Background485.4 +/- 292.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:1
Score:0.80
Offset:2
Orientation:forward strand
Alignment:ATCGCGTG
--TGCGTG

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:2
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:ATCGCGTG---
-TTGCGTGCVA

Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:ATCGCGTG--
GTCACGTGGT

PB0147.1_Max_2/Jaspar

Match Rank:4
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--ATCGCGTG----
NNGTCGCGTGNCAC

MF0007.1_bHLH(zip)_class/Jaspar

Match Rank:5
Score:0.70
Offset:0
Orientation:forward strand
Alignment:ATCGCGTG
ACCACGTG

USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-ATCGCGTG-
GGTCACGTGA

MA0004.1_Arnt/Jaspar

Match Rank:7
Score:0.68
Offset:2
Orientation:forward strand
Alignment:ATCGCGTG
--CACGTG

c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer

Match Rank:8
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:ATCGCGTG--
--CACGTGGN

PB0007.1_Bhlhb2_1/Jaspar

Match Rank:9
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------ATCGCGTG--------
GGAAGAGTCACGTGACCAATAC

bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-ATCGCGTG-
NGKCACGTGM