Information for motif28


Reverse Opposite:

p-value:1e-16
log p-value:-3.704e+01
Information Content per bp:1.530
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif13.44%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif2.87%
Average Position of motif in Targets442.3 +/- 390.6bp
Average Position of motif in Background942.0 +/- 655.6bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TCCCAGGGCCTG-
ATGCCCGGGCATGT

MA0146.2_Zfx/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TCCCAGGGCCTG
GGGGCCGAGGCCTG

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TCCCAGGGCCTG
HTTTCCCASG-----

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TCCCAGGGCCTG
GTCCCCAGGGGA--

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TCCCAGGGCCTG
---CNAGGCCT-

ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TCCCAGGGCCTG
---CTAGGCCT-

MA0524.1_TFAP2C/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----TCCCAGGGCCTG
CATGGCCCCAGGGCA--

PB0195.1_Zbtb3_2/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TCCCAGGGCCTG
NNNNTGCCAGTGATTG

MA0138.2_REST/Jaspar

Match Rank:9
Score:0.55
Offset:-7
Orientation:reverse strand
Alignment:-------TCCCAGGGCCTG--
GGCGCTGTCCATGGTGCTGAA

MA0154.2_EBF1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TCCCAGGGCCTG
TCCCTGGGGAN-