Information for motif29


Reverse Opposite:

p-value:1e-14
log p-value:-3.388e+01
Information Content per bp:1.530
Number of Target Sequences with motif59.0
Percentage of Target Sequences with motif19.34%
Number of Background Sequences with motif12.0
Percentage of Background Sequences with motif6.52%
Average Position of motif in Targets416.8 +/- 386.5bp
Average Position of motif in Background660.5 +/- 342.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0133.1_BRCA1/Jaspar

Match Rank:1
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-CAACACCG
ACAACAC--

PB0117.1_Eomes_2/Jaspar

Match Rank:2
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----CAACACCG----
NNGGCGACACCTCNNN

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:3
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----CAACACCG
SCTGTCARCACC-

PB0122.1_Foxk1_2/Jaspar

Match Rank:4
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------CAACACCG
CAAACAACAACACCT

PB0120.1_Foxj1_2/Jaspar

Match Rank:5
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CAACACCG-
ATGTCACAACAACAC

MA0493.1_Klf1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CAACACCG-
GGCCACACCCA

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CAACACCG--
GGCCACACCCAN

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CAACACCG
TTGCAACATN-

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CAACACCG-
GCCACACCCA

PH0157.1_Rhox11_1/Jaspar

Match Rank:10
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CAACACCG----
TCNNTTTACAGCGNNNT