Information for motif3


Reverse Opposite:

p-value:1e-41
log p-value:-9.528e+01
Information Content per bp:1.509
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif16.39%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif1.30%
Average Position of motif in Targets340.0 +/- 273.7bp
Average Position of motif in Background502.0 +/- 95.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--CACCAGGTGGCC------
GCCASCAGGGGGCGCYVNNG

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:2
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----CACCAGGTGGCC----
TGGCCACCAGGTGGCACTNT

MA0139.1_CTCF/Jaspar

Match Rank:3
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----CACCAGGTGGCC---
TGGCCACCAGGGGGCGCTA

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CACCAGGTGGCC
-NNCAGGTGNN-

MA0461.1_Atoh1/Jaspar

Match Rank:5
Score:0.70
Offset:3
Orientation:forward strand
Alignment:CACCAGGTGGCC
---CAGATGGC-

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CACCAGGTGGCC
-AACAGATGGC-

PB0047.1_Myf6_1/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CACCAGGTGGCC-
GAAGAACAGGTGTCCG

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:8
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CACCAGGTGGCC
VNAVCAGCTGGC-

n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CACCAGGTGGCC
--CCACGTGGNN

MA0526.1_USF2/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CACCAGGTGGCC
-GTCATGTGACC