Information for motif36


Reverse Opposite:

p-value:1e-8
log p-value:-2.042e+01
Information Content per bp:1.483
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif8.85%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif2.56%
Average Position of motif in Targets354.2 +/- 372.9bp
Average Position of motif in Background468.2 +/- 218.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0030.1_Hnf4a_1/Jaspar

Match Rank:1
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---ATTGACCG------
NNANTTGACCCCTNNNN

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:ATTGACCG
--TGACCT

PH0141.1_Pknox2/Jaspar

Match Rank:3
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--ATTGACCG------
NNATTGACAGGTGCTT

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:4
Score:0.72
Offset:-6
Orientation:reverse strand
Alignment:------ATTGACCG--
NNANTGATTGATNNNN

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:5
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--ATTGACCG
NTATYGATCH

PB0144.1_Lef1_2/Jaspar

Match Rank:6
Score:0.70
Offset:-6
Orientation:reverse strand
Alignment:------ATTGACCG--
NNANTGATTGATNTTN

PH0104.1_Meis2/Jaspar

Match Rank:7
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--ATTGACCG------
NTATTGACAGGTNNTN

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---ATTGACCG-
NTGATTGACAGN

PH0105.1_Meis3/Jaspar

Match Rank:9
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--ATTGACCG------
GTATTGACAGGTNNTT

PH0169.1_Tgif1/Jaspar

Match Rank:10
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---ATTGACCG------
GATATTGACAGCTGCGT