Information for motif39


Reverse Opposite:

p-value:1e-6
log p-value:-1.488e+01
Information Content per bp:1.819
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif10.49%
Number of Background Sequences with motif7.4
Percentage of Background Sequences with motif4.04%
Average Position of motif in Targets365.1 +/- 393.1bp
Average Position of motif in Background929.3 +/- 605.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ATCGACCA-------
CATAAGACCACCATTAC

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---ATCGACCA-
GYCATCMATCAT

MA0130.1_ZNF354C/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:ATCGACCA
ATCCAC--

MA0070.1_PBX1/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--ATCGACCA--
CCATCAATCAAA

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--ATCGACCA
NTATYGATCH

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:ATCGACCA-----
-NWAACCACADNN

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--ATCGACCA
TCATCAATCA

MA0502.1_NFYB/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--ATCGACCA-----
AAATGGACCAATCAG

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---ATCGACCA-
SSAATCCACANN

PB0134.1_Hnf4a_2/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----ATCGACCA----
GGCAAAAGTCCAATAA