Information for motif9


Reverse Opposite:

p-value:1e-29
log p-value:-6.835e+01
Information Content per bp:1.704
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif10.49%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif1.06%
Average Position of motif in Targets351.1 +/- 381.1bp
Average Position of motif in Background106.0 +/- 72.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GAGGTCAAGGCA-
-AGGTCAAGGTCA

MA0505.1_Nr5a2/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GAGGTCAAGGCA---
AAGTTCAAGGTCAGC

MA0512.1_Rxra/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GAGGTCAAGGCA
CAAAGGTCAGA---

MA0160.1_NR4A2/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GAGGTCAAGGCA
AAGGTCAC----

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAGGTCAAGGCA
CAAAGGTCAG----

MA0146.2_Zfx/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GAGGTCAAGGCA--
CAGGCCNNGGCCNN

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GAGGTCAAGGCA
-AGGTCA-----

PB0057.1_Rxra_1/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GAGGTCAAGGCA
NTNNNGGGGTCANGNNN

MA0071.1_RORA_1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GAGGTCAAGGCA
ATCAAGGTCA-----

TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GAGGTCAAGGCA--
GAGGTCAAAGGTCA