Information for motif11


Reverse Opposite:

p-value:1e-38
log p-value:-8.828e+01
Information Content per bp:1.672
Number of Target Sequences with motif164.0
Percentage of Target Sequences with motif4.43%
Number of Background Sequences with motif37.8
Percentage of Background Sequences with motif1.35%
Average Position of motif in Targets456.0 +/- 423.1bp
Average Position of motif in Background353.2 +/- 229.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0057.1_Hoxb13/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCCTAATAGA-----
AACCCAATAAAATTCG

PB0135.1_Hoxa3_2/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCCTAATAGA----
CCTTAATNGNTTTT

PH0148.1_Pou3f3/Jaspar

Match Rank:3
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------GCCTAATAGA
AAAATATGCATAATAAA

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCCTAATAGA-
-NCYAATAAAA

PB0186.1_Tcf3_2/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCCTAATAGA----
AGCCGAAAAAAAAAT

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCCTAATAGA
--CTAATKGV

MA0132.1_Pdx1/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCCTAATAGA
--CTAATT--

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GCCTAATAGA-----
CTACCAATAAAATTCT

ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCCTAATAGA
AGGCCTAG----

TATA-Box(TBP)/Promoter/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GCCTAATAGA---
-CCTTTTATAGNC