Information for motif12


Reverse Opposite:

p-value:1e-36
log p-value:-8.430e+01
Information Content per bp:1.732
Number of Target Sequences with motif70.0
Percentage of Target Sequences with motif1.89%
Number of Background Sequences with motif7.2
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets398.2 +/- 373.6bp
Average Position of motif in Background403.6 +/- 313.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-AGGTCAGTGGCA-
NAGGTCANTGACCT

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.73
Offset:0
Orientation:forward strand
Alignment:AGGTCAGTGGCA
AGGTCAAGGTCA

Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer

Match Rank:3
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AGGTCAGTGGCA--
GTAGGTCACTGGGTCA

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGGTCAGTGGCA
AGGTCA------

MA0071.1_RORA_1/Jaspar

Match Rank:5
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----AGGTCAGTGGCA
ATCAAGGTCA------

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AGGTCAGTGGCA
CAAAGGTCAG-----

MA0504.1_NR2C2/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGGTCAGTGGCA-
AGGGGTCAGAGGTCA

MA0160.1_NR4A2/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAGTGGCA
AAGGTCAC-----

MA0512.1_Rxra/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGGTCAGTGGCA
CAAAGGTCAGA----

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---AGGTCAGTGGCA
TCAAGGTCAN-----