Information for motif13


Reverse Opposite:

p-value:1e-36
log p-value:-8.381e+01
Information Content per bp:1.527
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets402.8 +/- 316.5bp
Average Position of motif in Background34.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-AGTCTTTGTGTG---
ANTCCTTTGTCTNNNN

MA0442.1_SOX10/Jaspar

Match Rank:2
Score:0.69
Offset:3
Orientation:forward strand
Alignment:AGTCTTTGTGTG
---CTTTGT---

PB0168.1_Sox14_2/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-AGTCTTTGTGTG--
NNNCCATTGTGTNAN

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AGTCTTTGTGTG-----
-NNNNTTGTGTGCTTNN

MA0514.1_Sox3/Jaspar

Match Rank:5
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AGTCTTTGTGTG
--CCTTTGTTTT

Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:forward strand
Alignment:AGTCTTTGTGTG-----
--CCATTGTATGCAAAT

MA0042.1_FOXI1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGTCTTTGTGTG
GGATGTTTGTTT-

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AGTCTTTGTGTG
--CCWTTGTY--

MA0041.1_Foxd3/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGTCTTTGTGTG
GAATGTTTGTTT-

PB0071.1_Sox4_1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGTCTTTGTGTG---
TNNTCCTTTGTTCTNNT