Information for motif2


Reverse Opposite:

p-value:1e-60
log p-value:-1.398e+02
Information Content per bp:1.951
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif1.38%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets376.0 +/- 370.1bp
Average Position of motif in Background1003.6 +/- 454.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0138.1_Pitx2/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----AGGAGTAATG---
TGAAGGGATTAATCATC

PB0203.1_Zfp691_2/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----AGGAGTAATG--
NTNNNAGGAGTCTCNTN

PH0130.1_Otx2/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AGGAGTAATG---
TGTAGGGATTAATTGTC

PH0129.1_Otx1/Jaspar

Match Rank:4
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AGGAGTAATG---
AGAGGGGATTAATTTAT

MA0090.1_TEAD1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AGGAGTAATG--
CNGAGGAATGTG

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:AGGAGTAATG-
---GKTAATGR

PH0025.1_Dmbx1/Jaspar

Match Rank:7
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----AGGAGTAATG--
TGAACCGGATTAATGAA

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGGAGTAATG
GGGAGGACNG

PB0099.1_Zfp691_1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AGGAGTAATG----
NNNNTGAGCACTGTNNG

PH0035.1_Gsc/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----AGGAGTAATG---
NNAAGGGATTAACGANT