Information for motif25


Reverse Opposite:

p-value:1e-24
log p-value:-5.535e+01
Information Content per bp:1.905
Number of Target Sequences with motif379.0
Percentage of Target Sequences with motif10.23%
Number of Background Sequences with motif165.2
Percentage of Background Sequences with motif5.89%
Average Position of motif in Targets426.4 +/- 384.9bp
Average Position of motif in Background381.1 +/- 341.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-ATGTAAGA--
CAGGTAAGTAT

MA0025.1_NFIL3/Jaspar

Match Rank:2
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--ATGTAAGA-
TTATGTAACAT

PH0085.1_Irx4/Jaspar

Match Rank:3
Score:0.65
Offset:-7
Orientation:forward strand
Alignment:-------ATGTAAGA--
AATATACATGTAAAACA

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:4
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ATGTAAGA
ATGATGCAAT-

PH0083.1_Irx3_1/Jaspar

Match Rank:5
Score:0.65
Offset:-7
Orientation:forward strand
Alignment:-------ATGTAAGA--
AAAATACATGTAATACT

PH0082.1_Irx2/Jaspar

Match Rank:6
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------ATGTAAGA--
TAAATACATGTAAAATT

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---ATGTAAGA
MTGATGCAAT-

MA0037.2_GATA3/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:ATGTAAGA
AGATAAGA

PH0084.1_Irx3_2/Jaspar

Match Rank:9
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------ATGTAAGA--
AATATACATGTAATATA

PH0086.1_Irx5/Jaspar

Match Rank:10
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------ATGTAAGA--
AATATACATGTAAAATT