Information for motif30


Reverse Opposite:

p-value:1e-21
log p-value:-4.902e+01
Information Content per bp:1.704
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets375.6 +/- 349.5bp
Average Position of motif in Background396.2 +/- 293.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0077.1_SOX9/Jaspar

Match Rank:1
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:AGGAAACAATAG
---GAACAATGG

PB0183.1_Sry_2/Jaspar

Match Rank:2
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--AGGAAACAATAG---
TCACGGAACAATAGGTG

PB0073.1_Sox7_1/Jaspar

Match Rank:3
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---AGGAAACAATAG-------
AATAAAGAACAATAGAATTTCA

PB0065.1_Sox15_1/Jaspar

Match Rank:4
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-AGGAAACAATAG----
TAGTGAACAATAGATTT

MA0087.1_Sox5/Jaspar

Match Rank:5
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:AGGAAACAATAG
---NAACAAT--

MA0084.1_SRY/Jaspar

Match Rank:6
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AGGAAACAATAG
-GTAAACAAT--

MF0011.1_HMG_class/Jaspar

Match Rank:7
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:AGGAAACAATAG
----AACAAT--

PB0173.1_Sox21_2/Jaspar

Match Rank:8
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--AGGAAACAATAG---
NNNNNGAACAATTGANN

ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AGGAAACAATAG
AGGAAACAGCTG

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AGGAAACAATAG
--RNAACAATGG