Information for motif34


Reverse Opposite:

p-value:1e-17
log p-value:-4.034e+01
Information Content per bp:1.740
Number of Target Sequences with motif149.0
Percentage of Target Sequences with motif4.02%
Number of Background Sequences with motif51.6
Percentage of Background Sequences with motif1.84%
Average Position of motif in Targets484.0 +/- 468.5bp
Average Position of motif in Background518.6 +/- 345.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0057.1_Hoxb13/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CGAATAAA-----
AACCCAATAAAATTCG

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CGAATAAA-
NCYAATAAAA

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CGAATAAA-----
CTACCAATAAAATTCT

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:4
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CGAATAAA--
TACTGGAAAAAAAA

PB0186.1_Tcf3_2/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CGAATAAA----
AGCCGAAAAAAAAAT

PB0179.1_Sp100_2/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CGAATAAA--
TCCGTCGCTTAAAAG

PB0108.1_Atf1_2/Jaspar

Match Rank:7
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CGAATAAA
GAATGACGAATAAC

PB0028.1_Hbp1_1/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CGAATAAA----
ACTATGAATGAATGAT

PB0032.1_IRC900814_1/Jaspar

Match Rank:9
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CGAATAAA---
ATTTACGACAAATAGC

MF0005.1_Forkhead_class/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CGAATAAA--
-AAATAAACA