Information for motif38


Reverse Opposite:

p-value:1e-14
log p-value:-3.256e+01
Information Content per bp:1.948
Number of Target Sequences with motif84.0
Percentage of Target Sequences with motif2.27%
Number of Background Sequences with motif24.7
Percentage of Background Sequences with motif0.88%
Average Position of motif in Targets478.0 +/- 373.5bp
Average Position of motif in Background287.8 +/- 257.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0465.1_CDX2/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GCTATAAG-
AAGCCATAAAA

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCTATAAG--
GTCATAAAAN

MA0109.1_Hltf/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GCTATAAG---
-NNATAAGGNN

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCTATAAG--
NAGATAAGNN

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCTATAAG--
CAGATAAGGN

MA0482.1_Gata4/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCTATAAG-
NNGAGATAAGA

Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCTATAAG-
NBWGATAAGR

PH0013.1_Cdx2/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GCTATAAG----
AAAGGTAATAAAATTT

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCTATAAG---
GGCCATAAATCA

PB0023.1_Gata6_1/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GCTATAAG-----
TATAGAGATAAGAATTG