Information for motif40


Reverse Opposite:

p-value:1e-10
log p-value:-2.343e+01
Information Content per bp:1.948
Number of Target Sequences with motif68.0
Percentage of Target Sequences with motif1.84%
Number of Background Sequences with motif21.4
Percentage of Background Sequences with motif0.76%
Average Position of motif in Targets357.6 +/- 273.9bp
Average Position of motif in Background334.8 +/- 292.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GTAGGCTA
BCAGACWA

MA0032.1_FOXC1/Jaspar

Match Rank:2
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GTAGGCTA
GGTAAGTA-----

PB0154.1_Osr1_2/Jaspar

Match Rank:3
Score:0.57
Offset:-7
Orientation:reverse strand
Alignment:-------GTAGGCTA-
NNNTTAGGTAGCNTNT

PB0161.1_Rxra_2/Jaspar

Match Rank:4
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GTAGGCTA----
TCGCGAAGGTTGTACT

PB0094.1_Zfp128_1/Jaspar

Match Rank:5
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----GTAGGCTA----
TTNGGGTACGCCNNANN

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GTAGGCTA
---NGCTN

PB0179.1_Sp100_2/Jaspar

Match Rank:7
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GTAGGCTA----
TCCGTCGCTTAAAAG

PB0181.1_Spdef_2/Jaspar

Match Rank:8
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---GTAGGCTA-----
CTACTAGGATGTNNTN

PH0168.1_Hnf1b/Jaspar

Match Rank:9
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----GTAGGCTA-----
AGCTGTTAACTAGCCGT

PH0145.1_Pou2f3/Jaspar

Match Rank:10
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GTAGGCTA------
TTGTATGCAAATTAGA