Information for motif6


Reverse Opposite:

p-value:1e-40
log p-value:-9.388e+01
Information Content per bp:1.737
Number of Target Sequences with motif87.0
Percentage of Target Sequences with motif2.35%
Number of Background Sequences with motif10.3
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets405.8 +/- 390.2bp
Average Position of motif in Background531.5 +/- 336.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0172.1_Sox1_2/Jaspar

Match Rank:1
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TGATTGTGAGTT
CTATAATTGTTAGCG

MA0100.2_Myb/Jaspar

Match Rank:2
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:TGATTGTGAGTT--
----TGGCAGTTGN

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TGATTGTGAGTT
NTGATTGACAGN-

MA0078.1_Sox17/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGATTGTGAGTT
CTCATTGTC----

MA0041.1_Foxd3/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TGATTGTGAGTT-
-GAATGTTTGTTT

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGATTGTGAGTT
TGAGTGACAGSC

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:TGATTGTGAGTT
----TGTCGGTT

MA0087.1_Sox5/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TGATTGTGAGTT
--ATTGTTA---

PB0149.1_Myb_2/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TGATTGTGAGTT-----
-NNNTGGCAGTTGGTNN

PH0152.1_Pou6f1_2/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TGATTGTGAGTT---
AAACATAATGAGGTTGC