Information for motif8


Reverse Opposite:

p-value:1e-40
log p-value:-9.383e+01
Information Content per bp:1.821
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets407.2 +/- 377.6bp
Average Position of motif in Background1135.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:1
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----TGAGAAAACATC
NNNVCTGWGYAAACASN

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TGAGAAAACATC
AAAGTAAACA--

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TGAGAAAACATC
AAAGTAAACA--

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TGAGAAAACATC
TATGTAAACANG

MA0148.3_FOXA1/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TGAGAAAACATC--
CAAAGTAAACANNNN

ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.67
Offset:2
Orientation:forward strand
Alignment:TGAGAAAACATC--
--AGGAAACAGCTG

MA0047.2_Foxa2/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TGAGAAAACATC
NCTAAGTAAACA--

MA0480.1_Foxo1/Jaspar

Match Rank:8
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TGAGAAAACATC-
--TGTAAACAGGA

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer

Match Rank:9
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TGAGAAAACATC
---GTAAACAG-

MA0031.1_FOXD1/Jaspar

Match Rank:10
Score:0.63
Offset:3
Orientation:forward strand
Alignment:TGAGAAAACATC
---GTAAACAT-