Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 3705)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 2804)	% of Background Sequences with Motif
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-48	-1.121e+02	0.0000	1300.0	35.09%	680.5	24.27%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-44	-1.024e+02	0.0000	2037.0	54.98%	1218.1	43.45%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-43	-1.007e+02	0.0000	1672.0	45.13%	954.8	34.06%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-40	-9.411e+01	0.0000	1988.0	53.66%	1196.0	42.66%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-40	-9.377e+01	0.0000	1268.0	34.22%	683.3	24.37%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-37	-8.676e+01	0.0000	2002.0	54.04%	1218.2	43.45%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-36	-8.300e+01	0.0000	1466.0	39.57%	836.8	29.85%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-35	-8.104e+01	0.0000	1091.0	29.45%	582.8	20.79%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-33	-7.746e+01	0.0000	1406.0	37.95%	803.6	28.66%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-25	-5.894e+01	0.0000	510.0	13.77%	239.3	8.53%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-24	-5.755e+01	0.0000	763.0	20.59%	400.4	14.28%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-23	-5.455e+01	0.0000	924.0	24.94%	511.2	18.24%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-23	-5.451e+01	0.0000	1048.0	28.29%	595.5	21.24%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-23	-5.425e+01	0.0000	1126.0	30.39%	649.1	23.15%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-23	-5.415e+01	0.0000	1028.0	27.75%	582.4	20.77%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-20	-4.672e+01	0.0000	678.0	18.30%	361.8	12.90%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-19	-4.522e+01	0.0000	1585.0	42.78%	994.8	35.49%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-17	-3.992e+01	0.0000	566.0	15.28%	299.5	10.68%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-16	-3.700e+01	0.0000	649.0	17.52%	358.8	12.80%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-14	-3.374e+01	0.0000	119.0	3.21%	40.6	1.45%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-13	-3.160e+01	0.0000	1019.0	27.50%	622.2	22.19%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-13	-3.097e+01	0.0000	563.0	15.20%	312.5	11.15%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-12	-2.927e+01	0.0000	2700.0	72.87%	1888.5	67.36%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-12	-2.900e+01	0.0000	1172.0	31.63%	737.5	26.31%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-11	-2.538e+01	0.0000	914.0	24.67%	564.5	20.14%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-11	-2.534e+01	0.0000	1483.0	40.03%	973.1	34.71%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-10	-2.421e+01	0.0000	641.0	17.30%	378.6	13.50%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-10	-2.357e+01	0.0000	106.0	2.86%	40.9	1.46%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-10	-2.339e+01	0.0000	244.0	6.59%	120.0	4.28%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-9	-2.285e+01	0.0000	1189.0	32.09%	767.7	27.39%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-9	-2.187e+01	0.0000	521.0	14.06%	302.3	10.78%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-9	-2.182e+01	0.0000	1705.0	46.02%	1149.3	41.00%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-9	-2.170e+01	0.0000	894.0	24.13%	560.5	19.99%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-9	-2.126e+01	0.0000	303.0	8.18%	160.7	5.73%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-9	-2.100e+01	0.0000	369.0	9.96%	203.1	7.24%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-9	-2.086e+01	0.0000	1498.0	40.43%	999.5	35.65%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-9	-2.076e+01	0.0000	703.0	18.97%	429.2	15.31%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-8	-2.060e+01	0.0000	1742.0	47.02%	1181.9	42.16%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-8	-2.031e+01	0.0000	2284.0	61.65%	1593.5	56.84%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-8	-1.856e+01	0.0000	716.0	19.33%	444.4	15.85%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-7	-1.814e+01	0.0000	1606.0	43.35%	1089.0	38.85%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-7	-1.763e+01	0.0000	1057.0	28.53%	689.9	24.61%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-7	-1.744e+01	0.0000	939.0	25.34%	605.8	21.61%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-7	-1.678e+01	0.0000	1698.0	45.83%	1164.0	41.52%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-7	-1.635e+01	0.0000	2566.0	69.26%	1827.7	65.20%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-7	-1.624e+01	0.0000	2195.0	59.24%	1541.3	54.98%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-6	-1.591e+01	0.0000	828.0	22.35%	531.6	18.96%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-6	-1.584e+01	0.0000	1286.0	34.71%	862.2	30.75%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-6	-1.540e+01	0.0000	1634.0	44.10%	1121.6	40.01%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-6	-1.491e+01	0.0000	346.0	9.34%	200.7	7.16%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e-6	-1.469e+01	0.0000	96.0	2.59%	43.0	1.53%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-6	-1.449e+01	0.0000	1254.0	33.85%	844.8	30.13%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-6	-1.443e+01	0.0000	2102.0	56.73%	1478.8	52.75%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-6	-1.414e+01	0.0000	476.0	12.85%	290.6	10.37%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-6	-1.396e+01	0.0000	813.0	21.94%	527.6	18.82%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-5	-1.375e+01	0.0000	354.0	9.55%	208.9	7.45%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-5	-1.374e+01	0.0000	986.0	26.61%	652.8	23.29%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-5	-1.337e+01	0.0000	923.0	24.91%	608.0	21.69%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-5	-1.328e+01	0.0000	1047.0	28.26%	698.5	24.92%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-5	-1.284e+01	0.0000	527.0	14.22%	329.7	11.76%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-5	-1.282e+01	0.0000	475.0	12.82%	293.2	10.46%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-5	-1.273e+01	0.0000	101.0	2.73%	47.1	1.68%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-5	-1.251e+01	0.0000	504.0	13.60%	315.0	11.24%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-5	-1.224e+01	0.0000	1735.0	46.83%	1211.4	43.21%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-5	-1.202e+01	0.0000	177.0	4.78%	95.7	3.41%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-5	-1.185e+01	0.0000	601.0	16.22%	384.2	13.70%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-5	-1.155e+01	0.0000	739.0	19.95%	483.3	17.24%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-4	-1.112e+01	0.0001	132.0	3.56%	68.1	2.43%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-4	-1.103e+01	0.0001	273.0	7.37%	160.4	5.72%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-4	-1.103e+01	0.0001	1053.0	28.42%	712.1	25.40%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-4	-1.101e+01	0.0001	2009.0	54.22%	1425.0	50.83%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-4	-1.092e+01	0.0001	619.0	16.71%	400.1	14.27%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-4	-1.087e+01	0.0001	244.0	6.59%	141.2	5.04%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-4	-1.071e+01	0.0001	493.0	13.31%	312.1	11.13%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-4	-1.035e+01	0.0001	1453.0	39.22%	1010.5	36.05%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-4	-1.017e+01	0.0001	509.0	13.74%	325.4	11.61%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-4	-9.723e+00	0.0002	111.0	3.00%	57.1	2.04%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-4	-9.706e+00	0.0002	398.0	10.74%	249.4	8.89%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-4	-9.701e+00	0.0002	385.0	10.39%	240.5	8.58%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-4	-9.635e+00	0.0002	944.0	25.48%	639.8	22.82%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-4	-9.606e+00	0.0002	749.0	20.22%	498.8	17.79%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-4	-9.426e+00	0.0002	474.0	12.79%	303.5	10.82%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-3	-9.205e+00	0.0003	820.0	22.13%	551.4	19.67%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-3	-9.025e+00	0.0004	176.0	4.75%	100.9	3.60%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-3	-8.987e+00	0.0004	820.0	22.13%	552.0	19.69%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-3	-8.915e+00	0.0004	423.0	11.42%	269.4	9.61%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-3	-8.892e+00	0.0004	131.0	3.54%	71.9	2.56%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-3	-8.859e+00	0.0004	1325.0	35.76%	923.2	32.93%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-3	-8.768e+00	0.0004	291.0	7.85%	178.2	6.36%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-3	-8.727e+00	0.0004	452.0	12.20%	290.4	10.36%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-3	-8.600e+00	0.0005	54.0	1.46%	24.9	0.89%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e-3	-8.510e+00	0.0005	319.0	8.61%	198.3	7.07%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-3	-8.433e+00	0.0006	222.0	5.99%	132.4	4.72%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-3	-8.424e+00	0.0006	382.0	10.31%	242.5	8.65%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-3	-8.188e+00	0.0007	562.0	15.17%	370.9	13.23%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-3	-8.162e+00	0.0007	615.0	16.60%	408.8	14.58%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-3	-7.940e+00	0.0009	302.0	8.15%	188.3	6.72%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-3	-7.725e+00	0.0011	636.0	17.17%	425.8	15.19%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-3	-7.721e+00	0.0011	7.0	0.19%	0.9	0.03%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-3	-7.654e+00	0.0012	1259.0	33.98%	881.0	31.43%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-3	-7.643e+00	0.0012	855.0	23.08%	585.0	20.87%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e-3	-7.519e+00	0.0013	762.0	20.57%	517.5	18.46%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-3	-7.333e+00	0.0016	405.0	10.93%	262.8	9.38%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-3	-7.310e+00	0.0016	385.0	10.39%	248.2	8.85%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-3	-7.278e+00	0.0016	597.0	16.11%	399.6	14.25%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e-3	-7.207e+00	0.0017	120.0	3.24%	67.2	2.40%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-3	-7.078e+00	0.0019	12.0	0.32%	4.0	0.14%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-3	-7.044e+00	0.0020	727.0	19.62%	494.7	17.65%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-3	-6.974e+00	0.0021	444.0	11.98%	291.6	10.40%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-2	-6.805e+00	0.0025	555.0	14.98%	371.3	13.25%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-2	-6.802e+00	0.0025	412.0	11.12%	269.2	9.60%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-2	-6.619e+00	0.0029	977.0	26.37%	679.8	24.25%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-2	-6.523e+00	0.0032	1886.0	50.90%	1359.0	48.47%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-2	-6.518e+00	0.0032	1956.0	52.79%	1411.3	50.34%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-2	-6.444e+00	0.0034	779.0	21.03%	535.7	19.11%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-2	-6.436e+00	0.0034	746.0	20.13%	511.1	18.23%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-2	-6.355e+00	0.0037	949.0	25.61%	660.9	23.58%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-2	-6.243e+00	0.0041	222.0	5.99%	138.7	4.95%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-2	-6.234e+00	0.0041	1768.0	47.72%	1271.0	45.34%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2	-6.116e+00	0.0045	204.0	5.51%	126.5	4.51%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-2	-5.955e+00	0.0053	107.0	2.89%	61.6	2.20%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-2	-5.914e+00	0.0054	1174.0	31.69%	829.0	29.57%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-2	-5.737e+00	0.0064	63.0	1.70%	33.5	1.19%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-2	-5.685e+00	0.0067	1447.0	39.06%	1034.5	36.90%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-2	-5.491e+00	0.0081	386.0	10.42%	256.1	9.14%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-2	-5.355e+00	0.0092	1236.0	33.36%	879.9	31.39%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-2	-5.267e+00	0.0100	82.0	2.21%	46.8	1.67%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-2	-5.117e+00	0.0115	1037.0	27.99%	734.0	26.18%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-2	-5.063e+00	0.0121	746.0	20.13%	519.6	18.53%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-2	-4.934e+00	0.0135	81.0	2.19%	46.7	1.67%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-2	-4.934e+00	0.0135	81.0	2.19%	46.7	1.67%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-2	-4.902e+00	0.0138	90.0	2.43%	52.9	1.89%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-2	-4.834e+00	0.0147	178.0	4.80%	112.7	4.02%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-2	-4.631e+00	0.0179	2686.0	72.50%	1983.2	70.74%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-4.490e+00	0.0205	745.0	20.11%	522.3	18.63%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-4.446e+00	0.0212	246.0	6.64%	161.6	5.76%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-4.436e+00	0.0213	140.0	3.78%	87.8	3.13%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-4.416e+00	0.0215	713.0	19.24%	499.5	17.82%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1	-4.390e+00	0.0219	1440.0	38.87%	1039.5	37.08%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-4.388e+00	0.0219	812.0	21.92%	572.2	20.41%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-1	-4.364e+00	0.0222	39.0	1.05%	21.0	0.75%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-1	-4.311e+00	0.0233	91.0	2.46%	54.0	1.93%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-4.302e+00	0.0233	151.0	4.08%	95.5	3.41%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-1	-4.175e+00	0.0263	463.0	12.50%	318.6	11.36%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-4.101e+00	0.0281	367.0	9.91%	249.0	8.88%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-4.081e+00	0.0285	955.0	25.78%	680.9	24.29%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-1	-4.059e+00	0.0289	617.0	16.65%	431.1	15.38%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-4.048e+00	0.0290	1436.0	38.76%	1039.4	37.07%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e-1	-3.988e+00	0.0306	954.0	25.75%	680.0	24.26%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-3.748e+00	0.0386	1236.0	33.36%	892.9	31.85%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-1	-3.696e+00	0.0404	683.0	18.43%	482.8	17.22%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-1	-3.686e+00	0.0406	890.0	24.02%	635.2	22.66%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-3.666e+00	0.0411	209.0	5.64%	138.3	4.93%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-3.597e+00	0.0438	81.0	2.19%	49.9	1.78%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-1	-3.554e+00	0.0454	356.0	9.61%	244.2	8.71%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-1	-3.545e+00	0.0455	110.0	2.97%	69.5	2.48%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-3.397e+00	0.0525	24.0	0.65%	12.2	0.44%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-3.374e+00	0.0533	367.0	9.91%	253.6	9.05%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-3.272e+00	0.0587	268.0	7.23%	182.0	6.49%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-1	-3.192e+00	0.0632	717.0	19.35%	511.6	18.25%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-3.083e+00	0.0700	197.0	5.32%	132.5	4.72%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-2.897e+00	0.0838	193.0	5.21%	130.7	4.66%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-2.843e+00	0.0880	280.0	7.56%	193.4	6.90%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-2.803e+00	0.0909	909.0	24.53%	658.0	23.47%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-2.658e+00	0.1045	190.0	5.13%	129.8	4.63%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-1	-2.602e+00	0.1098	311.0	8.39%	217.9	7.77%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e-1	-2.567e+00	0.1131	275.0	7.42%	191.4	6.83%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-2.545e+00	0.1149	19.0	0.51%	10.3	0.37%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e-1	-2.489e+00	0.1208	22.0	0.59%	12.4	0.44%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-2.414e+00	0.1294	1279.0	34.52%	938.3	33.47%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-2.393e+00	0.1315	1268.0	34.22%	930.9	33.20%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-1	-2.388e+00	0.1315	1005.0	27.13%	733.4	26.16%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-2.328e+00	0.1386	515.0	13.90%	369.3	13.17%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-2.298e+00	0.1420	67.0	1.81%	43.0	1.54%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.262e+00	0.1464	183.0	4.94%	126.6	4.52%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.223e+00	0.1514	484.0	13.06%	347.2	12.38%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.113e+00	0.1680	245.0	6.61%	172.3	6.15%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-2.082e+00	0.1723	194.0	5.24%	135.6	4.84%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-2.010e+00	0.1841	449.0	12.12%	323.8	11.55%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.943e+00	0.1959	153.0	4.13%	106.8	3.81%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.879e+00	0.2077	169.0	4.56%	118.1	4.21%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.820e+00	0.2190	215.0	5.80%	152.3	5.43%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.814e+00	0.2192	1980.0	53.44%	1475.1	52.62%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.796e+00	0.2218	990.0	26.72%	729.0	26.00%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.796e+00	0.2218	1743.0	47.04%	1296.9	46.26%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.712e+00	0.2387	199.0	5.37%	141.1	5.03%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.645e+00	0.2540	1119.0	30.20%	828.6	29.56%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.636e+00	0.2550	393.0	10.61%	285.8	10.19%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.614e+00	0.2591	578.0	15.60%	423.3	15.10%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.599e+00	0.2617	202.0	5.45%	144.9	5.17%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.546e+00	0.2743	84.0	2.27%	58.7	2.10%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.510e+00	0.2830	320.0	8.64%	232.2	8.28%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.492e+00	0.2866	383.0	10.34%	279.7	9.98%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.489e+00	0.2866	85.0	2.29%	59.2	2.11%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.398e+00	0.3118	181.0	4.89%	130.5	4.65%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.389e+00	0.3128	98.0	2.65%	69.0	2.46%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.362e+00	0.3199	33.0	0.89%	22.8	0.81%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.361e+00	0.3199	58.0	1.57%	40.8	1.45%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.348e+00	0.3212	727.0	19.62%	538.1	19.19%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.335e+00	0.3237	179.0	4.83%	129.6	4.62%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.319e+00	0.3274	92.0	2.48%	65.6	2.34%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.286e+00	0.3367	74.0	2.00%	52.5	1.87%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.286e+00	0.3367	266.0	7.18%	194.7	6.94%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.261e+00	0.3416	532.0	14.36%	393.2	14.02%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.213e+00	0.3566	175.0	4.72%	127.9	4.56%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.188e+00	0.3640	524.0	14.14%	388.4	13.85%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.133e+00	0.3828	1292.0	34.87%	967.6	34.52%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.112e+00	0.3890	116.0	3.13%	84.1	3.00%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-9.774e-01	0.4429	287.0	7.75%	213.8	7.63%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-9.551e-01	0.4508	16.0	0.43%	12.0	0.43%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-9.438e-01	0.4537	121.0	3.27%	89.5	3.19%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-9.127e-01	0.4658	250.0	6.75%	186.1	6.64%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-8.903e-01	0.4741	87.0	2.35%	64.0	2.28%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-8.681e-01	0.4825	1078.0	29.10%	811.2	28.94%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-8.018e-01	0.5132	561.0	15.14%	422.6	15.08%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-7.957e-01	0.5140	106.0	2.86%	79.5	2.83%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-7.868e-01	0.5161	1098.0	29.64%	829.0	29.57%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-6.990e-01	0.5609	1066.0	28.77%	806.4	28.77%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-6.407e-01	0.5919	665.0	17.95%	504.2	17.98%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e0	-5.831e-01	0.6241	43.0	1.16%	33.1	1.18%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-5.758e-01	0.6259	207.0	5.59%	158.6	5.66%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-5.556e-01	0.6358	595.0	16.06%	453.3	16.17%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-5.419e-01	0.6416	70.0	1.89%	54.5	1.94%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-5.407e-01	0.6416	638.0	17.22%	486.8	17.36%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-5.246e-01	0.6470	14.0	0.38%	11.5	0.41%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-4.880e-01	0.6682	272.0	7.34%	209.3	7.47%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e0	-4.511e-01	0.6902	615.0	16.60%	471.6	16.82%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-4.163e-01	0.7115	308.0	8.31%	238.9	8.52%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-4.128e-01	0.7115	76.0	2.05%	60.0	2.14%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-3.466e-01	0.7563	151.0	4.08%	119.6	4.27%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-3.457e-01	0.7563	354.0	9.55%	275.8	9.84%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-3.435e-01	0.7563	24.0	0.65%	20.1	0.72%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-2.958e-01	0.7854	191.0	5.16%	151.5	5.40%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-2.116e-01	0.8508	57.0	1.54%	49.0	1.75%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.957e-01	0.8607	172.0	4.64%	139.8	4.99%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.775e-01	0.8728	133.0	3.59%	109.6	3.91%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.160e-01	0.9243	58.0	1.57%	51.2	1.83%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e0	-1.124e-01	0.9243	85.0	2.29%	73.9	2.63%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-8.696e-02	0.9436	151.0	4.08%	127.9	4.56%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-5.688e-02	0.9683	254.0	6.86%	211.1	7.53%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-4.910e-02	0.9718	8.0	0.22%	10.2	0.36%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-3.073e-02	0.9858	145.0	3.91%	127.1	4.54%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.450e-02	0.9878	70.0	1.89%	66.9	2.39%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.120e-04	1.0000	72.0	1.94%	81.8	2.92%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-0.000e+00	1.0000	191.0	5.16%	223.7	7.98%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	0.000e+00	1.0000	158.0	4.26%	216.3	7.72%