Information for motif14


Reverse Opposite:

p-value:1e-15
log p-value:-3.585e+01
Information Content per bp:1.710
Number of Target Sequences with motif61.0
Percentage of Target Sequences with motif2.17%
Number of Background Sequences with motif22.9
Percentage of Background Sequences with motif0.64%
Average Position of motif in Targets342.4 +/- 319.9bp
Average Position of motif in Background431.5 +/- 659.4bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GCCTCTTATAAA-
---NCYAATAAAA

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GCCTCTTATAAA-
CTTAACCACTTAAGGAT

PH0004.1_Nkx3-2/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCCTCTTATAAA-
CATAACCACTTAACAAC

PH0048.1_Hoxa13/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCCTCTTATAAA--
AAACCTCGTAAAATTT

MA0108.2_TBP/Jaspar

Match Rank:5
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GCCTCTTATAAA--------
-----GTATAAAAGGCGGGG

POL012.1_TATA-Box/Jaspar

Match Rank:6
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GCCTCTTATAAA--------
-----GTATAAAAGGCGGGG

PB0022.1_Gata5_1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCCTCTTATAAA----
NTNTTCTTATCAGTNTN

TATA-Box(TBP)/Promoter/Homer

Match Rank:8
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GCCTCTTATAAA---
---CCTTTTATAGNC

PH0078.1_Hoxd13/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCCTCTTATAAA-----
-CTACCAATAAAATTCT

PH0068.1_Hoxc13/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCCTCTTATAAA--
AAAGCTCGTAAAATTT