Information for motif2


Reverse Opposite:

p-value:1e-31
log p-value:-7.174e+01
Information Content per bp:1.725
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets288.3 +/- 208.6bp
Average Position of motif in Background285.7 +/- 215.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.78
Offset:-7
Orientation:forward strand
Alignment:-------GCCCCCAAGTGG-
CNNBRGCGCCCCCTGSTGGC

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:2
Score:0.78
Offset:-5
Orientation:forward strand
Alignment:-----GCCCCCAAGTGG---
ANAGTGCCACCTGGTGGCCA

MA0139.1_CTCF/Jaspar

Match Rank:3
Score:0.77
Offset:-4
Orientation:reverse strand
Alignment:----GCCCCCAAGTGG---
TAGCGCCCCCTGGTGGCCA

n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GCCCCCAAGTGG--
----CCACGTGGNN

MA0122.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.64
Offset:4
Orientation:forward strand
Alignment:GCCCCCAAGTGG-
----TTAAGTGGA

MA0104.3_Mycn/Jaspar

Match Rank:6
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:GCCCCCAAGTGG-
-----CACGTGGC

c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GCCCCCAAGTGG--
----CCACGTGGNN

MA0147.2_Myc/Jaspar

Match Rank:8
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GCCCCCAAGTGG--
----CCATGTGCTT

PH0111.1_Nkx2-2/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCCCCCAAGTGG----
NANTTTCAAGTGGTTAN

PB0201.1_Zfp281_2/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GCCCCCAAGTGG
AGGAGACCCCCAATTTG